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Swat, M.  H., S. D. Hester, A. Balter, R. Heiland, B.  L. Zaitlen, and J. Glazier, "Multicell simulations of development and disease using the CompuCell3D simulation environment" Systems Biology, vol. 500, Clifton, N.J., Humana Press, pp. 361–428, Apr 2009, http://10.1007/978-1-59745-525-1, http://www.springerlink.com/content/m3751486766r2495/. Abstract
Swany, M., Scalable Integrated Performance Analysis of Multi-Gigabit Networks, Internet2 Spring Member Meeting, Apr 2012.
Swany, M., Monitoring and Accelerating GridFTP, GlobusWorld, Apr 2012.
Swany, M., GEMINI: A GENI Instrumentation and Measurement Architecture, Global Environment for Network Innovations Engineering Conference (GEC), Los Angeles, CA, Mar 2012.
Sun, Y., S. Jensen, S. L. Pallickara, and B. Plale, "Personal Workspace for Large-scale Data-driven Computational Experimentation" 7th IEEE/ACM International Conference on Grid Computing (Grid'06), Barcelona, Spain, pp. 112-119, Sep 2006, http://doi.ieeecomputersociety.org/10.1109/ICGRID.2006.311005. Abstract
Sun, Y., M. Terkhorn, B. Plale, and S. Kowalczyk, HathiTrust Research Center Use Cases, International Conference for High Performance Computing, Networking, Storage and Analysis (Supercomputing), http://sc11.supercomputing.org/index.php, Seattle, Washington, US, Nov 2011.  Download: htrc_use_cases_sc11.pdf (1.7 MB)
Sun, Y., B. Plale, and S. Jensen, XMC Cat Among the Stars, International Conference for High Performance Computing, Networking, Storage and Analysis (Supercomputing), http://sc11.supercomputing.org/index.php, Seattle, Washington, US, Nov 2011.  Download: xmccat_among_stars_0.pdf (1.41 MB)
Sun, L., H. - M. Li, M. J. Seufferheld, K. Walters, V. Margam, A. Jannasch, N. Diaz, C. P. Riley, W. Sun, Y. - F. Li, et al., "Systems-Scale Analysis Reveals Pathways Involved in Cellular Response to Methamphetamine" PLoS One, vol. 6, no. 4, pp. e18215, Apr 2011, 10.1371/journal.pone.0018215.. Abstract
Sun, Y., S. Marru, and B. Plale, "Experience with Bursty Workflow-driven Workloads in LEAD Science Gateway" TeraGrid 2008, Las Vegas, NV, Jun 2008, http://www.cs.indiana.edu/~plale/papers/Sun-Teragrid2008.pdf. Abstract
Sun, Y., M. Terkhorn, and B. Plale, HathiTrust Research Center Architecture User-Facing Services, International Conference for High Performance Computing, Networking, Storage and Analysis (Supercomputing), http://sc11.supercomputing.org/index.php, Seattle, Washington, US, Nov 2011.  Download: htrc_arch_frontend_rev2.pdf (1.92 MB)
Sun, Y., Y. - W. Cheah, and B. Plale, "Limits of Automated Curation of e-Science Data" Microsoft Research e-Science Workshop, Indianapolis, IN, Dec 2008.
Sun, Y., HathiTrust Research Center API Overview (API in Detail Part 1), HathiTrust Research Center UnCamp 2012, http://d2i.indiana.edu/htrc/uncamp2012, http://wiki.htrc.illinois.edu/display/OUT/HTRC+UnCamp2012, Indiana University, Sep 2012.  Download: htrc-uncamp2012-themed-htrc-api-overview-1.pdf (679.09 KB)
Sun, Y., M. Terkhorn, and B. Plale, HathiTrust Research Center Architecture Data Subsystem, International Conference for High Performance Computing, Networking, Storage and Analysis, http://sc11.supercomputing.org/index.php, Seattle, Washington, US, Nov 2011.  Download: htrc_arch_backend_rev2.pdf (642.92 KB)
Sun, C., and A. Hsu, "Multi-level lattice Boltzmann Model on Square Lattice for Compressible Flows" Physical Review E, vol. 68, no. 12, pp. 16303, July, 2003.
Sun, Y., B. Cao, J. Cox, C. Herath, S. Jensen, and B. Plale, "Tutorial: Event Processing in a Weather Data Science Gateway" 3rd ACM International Conference on Distributed Event-Based Systems, Jul 2009.
Sun, Y., HTRC Data API in Detail Part II (Developing Algorithms with the API), HathiTrust Research Center UnCamp 2012, http://d2i.indiana.edu/htrc/uncamp2012, http://wiki.htrc.illinois.edu/display/OUT/HTRC+UnCamp2012, Indiana University, Sep 2012.  Download: htrc-uncamp2012-themed-htrc-api-handson.pdf (138.15 KB)
Sui, Y., K. Yang, Y. Du, S. Orr, and X. Zou, "A novel key management scheme using biometrics" Mobile Multimedia/Image Processing, Security, and Applications 2010 , vol. 7708, Orlando, FL, SPIE, pp. 77080C-77080C-10, Apr 2010, 10.1117/12.850079 . Abstract
Sui, Y., E. Y. Du, and X. Zou, "A new biometric-based authentication system" IEEE Symposium on Security and Privacy, Oakland, CA, IEEE Computer Society, May 22-25 2011.
Subramanian, G., and Y. Simmhan, "Tools for Scalable Genome Haplotyping in the Windows Azure Cloud" Microsoft e-Science Workshop, Pittsburgh, PA USA, Oct 2009. Abstract
Stewart, C. A., D. Hart, D. K. Berry, G. J. Olsen, E. A. Wernert, and W. Fischer, "Parallel Implementation and Performance of fastDNAml – A Program for Maximum Likelihood Phylogenetic Inference" Conference on High Performance Networking and Computing, Denver, CO, ACM, pp. 20-20, Nov 2001, http://doi.acm.org/10.1145/582034.582054. Abstract
Stewart, C. A., "Bioinformatics: Transforming Biomedical Research and Medical Care" Communication of ACM, vol. 47, no. 11, pp. 31-33, 2004.
Stewart, C. A., D. Hart, R. Repasky, M. Papakhian, A. Shankar, E. A. Wernert, A. D. Arenson, and G. Bernbom, "Advanced information technology support for life sciences research" Association for Computing Machinery. Special Interest Group on University and College Computing Services (SIGUCCS’03), San Antonio, Texas, ACM, Sep 2003, http://delivery.acm.org/10.1145/950000/947472/p7-stewart.pdf?key1=947472&key2=7858166621&coll=GUIDE&dl=GUIDE&CFID=76893714&CFTOKEN=63867740. Abstract
Stewart, C., FutureGrid: an experimental, high-performance grid testbed, TeraGrid meeting, Mar 03 2010.  Download: stewart_futuregrid_tgq_mar_2010.pptx (1.96 MB)
Stewart, C. A., S. Simms, B. Plale, M. Link, D. Hancock, and G. C. Fox, "What is Cyberinfrastructure?" Special Interest Group on University and College Computing Services (SIGUCCS) 2010 Fall Conference, Norfolk, VA, Association for Computing Machinery (ACM) , Oct 2010, 10.1145/1878335.1878347, http://grids.ucs.indiana.edu/ptliupages/publications/paper_what_is_cyberinfrastructure_penultimate_really.pdf. Abstract
Stewart, C., M. Mueller, and M. Lingwall, Progress Towards Petascale Applications in Biology , Bloomington, IN, Indiana University, 2006.