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VISLab
Baker, M. P., R. Heiland, E. Bachta, and M. Das, "VisPort: Web-Based Access to Community-Based Visualization Functionality" TeraGrid Conference, Madison, WI, Jun 2007, http://vis.iu.edu/Publications/VisPortTeraGrid2007.pdf.
Moad, A., C. Moad, J. Perry, R. Wampler, G. S. Goeken, N. Begue, T. Shen, R. Heiland, and G. Simpson, "NLO Predict: Visualization and Data Analysis Software for NonLinear Optics" Journal of Computational Chemistry, Apr 2007, http://www3.interscience.wiley.com/cgi-bin/abstract/114214601/ABSTRACT.
sdal
Heiland, R., "XML for Bioinformatics" Briefings in Bioinformatics: Briefings in Bioinformatics, February, 2006.
Dantzer, J., C. Moad, R. Heiland, and S. Mooney, "MutDB services: Interactive Structural Analysis of Mutation Data" Nucleic Acids Research, vol. 33: Nucleic Acids Research, July, 2005.
Singh, A., A. Olowoyeye, P. Baenzinger, J. Dantzer, M. Kann, P. Radivojac, R. Heiland, and S. Mooney, "MutDB: Update on Development of Tools for the Biochemical Analysis of Genetic Variation" Nucleic Acids Research, 2007.
Baker, M. P., R. Heiland, E. Bachta, and M. Das, "VisPort: Web-Based Access to Community-Based Visualization Functionality" TeraGrid Conference, Madison, WI, Jun 4-8 2007.
Peters, B., C. Moad, E. Youn, K. Buffington, R. Heiland, and S. D. Mooney, "Identification of Similar Regions of Protein Structures Using Integrated Sequence and Structure Analysis Tools" BMC Structural Biology, vol. 6, no. 4: BMC Structural Biology, 2006.
Heiland, R., S. D. Mooney, J. Boverhof, K. Jackson, M. Christie, M. Swat, A. Balter, and J. Insley, "Python for Scientific Gateways Development" Proceedings of International Workshop on Grid Computing Environments, Reno, NV, Nov., 2007, http://library.rit.edu/oajournals/index.php/gce/issue/current/showToc.
OSL
Swat, M.  H., S. D. Hester, A. Balter, R. Heiland, B.  L. Zaitlen, and J. Glazier, "Multicell simulations of development and disease using the CompuCell3D simulation environment" Systems Biology, vol. 500, Clifton, N.J., Humana Press, pp. 361–428, Apr 2009, http://10.1007/978-1-59745-525-1, http://www.springerlink.com/content/m3751486766r2495/. Abstract
fellows
Peters, B., C. Moad, E. Youn, K. Buffington, R. Heiland, and S. Mooney, "Identification of Structurally Similar Regions of Protein Structures Using the S-BLEST Website and Services" BMC Structural Biology, vol. 6, no. 4, 2006.
Dantzer, J., C. Moad, R. Heiland, and S. Mooney, "MutDB Services: Interactve Stuctural Analysis of Mutation Data" Nucleic Acids Research, vol. 33, pp. W311-W314, 2005.
Cluster Computing
Heiland, R., M. Swat, B. Zaitlen, J. Glazier, and A. Lumsdaine, "Workflows for Parameter Studies of Multi-Cell Modeling" Proceedings of the HPC 2010 Symposium of the Spring Simulation Multiconference, Orlando, FL, pp. 140–145, Apr 2010, http://biocomplexity.indiana.edu/jglazier/docs/papers/118.pdf. Abstract
CGL
Dong, X., K. Gilbert, R. Guha, R. Heiland, J. Kim, M. Pierce, G. C. Fox, and D. Wild, "Web Service Infrastructure for Chemoinformatics" Journal of Chemical Information and Modeling, vol. 47, no. 4, pp. 1303-1307, Jun 2007, http://10.1021/ci6004349. Abstract