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Merks, R., S. Brodsky, M. Goligorksy, S. Newman, and J. Glazier, "Cell Elongation is Key to in Silico Replication of in Vitro Vasculogenesis and Subsequent Remodeling" Developmental Biology, vol. 289, pp. 44-54, 2006.
Merks, R., S. Newman, and J. Glazier, "Cell-Oriented Modeling of in Vitro Capillary Development" Cellular Automata: 6th International Conference on Cellular Automata for Research and Industry (ACRI 2004), Amsterdam, The Netherlands, pp. 425-434, October 25-28, 2004.
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Kiskowski, M., M. Alber, G. Thomas, J. Glazier, N. Bronstein, J. Pu, and S. Newman, "Interplay Between Activator–Inhibitor Coupling and Cell-Matrix Adhesion in a Cellular Automaton Model for Chondrogenic Patterning" Developmental Biology, vol. 271, pp. 372-387, 2004.
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Izaguirre, J., R. Chaturvedi, C. Huang, T. Cickovski, J. Coffland, G. Thomas, G. Forgacs, M. Alber, H. George, H. G. E. Hentschel, et al., "CompuCell, a Multi-Model Framework for Simulation of Morphogenesis" Bioinformatics, vol. 20, pp. 1129-1137, 2004.
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Hentschel, H. G. E., T. Glimm, J. Glazier, and S. Newman, "Dynamical Mechanisms for Skeletal Pattern Formation in the Vertebrate Limb" Proceedings of the Royal Society London , vol. B 271, pp. 1713-1722, 2004.
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Cickovski, T., C. Huang, R. Chaturvedi, T. Glimm, H. G. E. Hentschel, M. Alber, J. Glazier, S. Newman, and J. Izaguirre, "A Framework for Three-Dimensional Simulation of Morphogenisis" IEEE/ACM Transactions on Computational Biology and Bioinformatics, vol. 2, pp. 273-288, 2005.
Chaturvedi, R., C. Huang, J. Izaguirre, S. Newman, J. Glazier, and M. Alber, "A Hybrid Discrete-Continuum Model for 3-D Skeletogenesis of the Vertebrate Limb" Cellular Automata: 6th International Conference on Cellular Automata for Research and Industry (ACRI 2004), Amsterdam, The Netherlands, pp. 343-552, October 25-28, 2004.
Chaturvedi, R., J. Glazier, S. Newman, and M. Alber, "On Multiscale Approaches to Three-Dimensional Modeling of Morphogenisis" Journal of the Royal Society Interface 2, pp. 237-253, 2005.