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Book Chapter

Pallickara, S., J. Ekanayake, and G. C. Fox, "Granules: A Lightweight Runtime for Scalable Computing with Support for Map-Reduce" Cloud Computing and Software Services: Theory and Techniques: CRC Press (Taylor and Francis), Jul 2010, http://grids.ucs.indiana.edu/ptliupages/publications/K10175_C009.pdf.

Ekanayake, J., X. Qiu, T. Gunarathne, S. Beason, and G. C. Fox, "High Performance Parallel Computing with Clouds and Cloud Technologies" Cloud Computing and Software Services: Theory and Techniques: CRC Press (Taylor and Francis), Jul 2010, http://grids.ucs.indiana.edu/ptliupages/publications/cloud_handbook_final-with-diagrams.pdf. Abstract

Conference Paper

Qiu, X., J. Ekanayake, S. Beason, T. Gunarathne, G. C. Fox, R. Barga, and D. Gannon, "Cloud Technologies for Bioinformatics Applications" 2nd ACM Workshop on Many-Task Computing on Grids and Supercomputers (Supercomputing'09), Portland, OR, Nov 09, 2009, http://grids.ucs.indiana.edu/ptliupages/publications/MTAGS09-23.pdf. Abstract

Qiu, X., J. Ekanayake, G. C. Fox, T. Gunarathne, and S. Beason, "Computational Methods for Large Scale DNA Data Analysis" Microsoft eScience workshop, Carnegie Mellon University, Pittsburgh, PA, Oct 16 2009, http://grids.ucs.indiana.edu/ptliupages/publications/ComputationalMethodsforLargeScaleDNADataAnalysis.pdf. Abstract

Qiu, X., J. Ekanayake, T. Gunarathne, S. - H. Bae, J. Y. Choi, S. Beason, and G. C. Fox, "Using MapReduce Technologies in Bioinformatics and Medical Informatics" The International Conference for High Performance Computing, Networking, Storage and Analysis (SC'09), Portland, OR, Nov 16 2009, http://grids.ucs.indiana.edu/ptliupages/publications/UsingMapReduceTechnologies.docx.

Conference Proceedings

Alay, S., and J. Ekanayake, "Analysis of the usage statistics of robots exclusion standard" IADIS International Conference WWW/Internet 2006, vol. V II, Murcia, Spain, IADIS, pp. 345-348, Oct 2006, http://grids.ucs.indiana.edu/ptliupages/publications/IADISConferenceRobtoExclusion.pdf. Abstract

Ajay, S., and J. Ekanayake, "Analysis of the Usage Statistics of Robots Exclusion Standards Iadis" International Conference WWW/Internet, Murcia, Spain, Oct 5-8 2006.

Perera, S., C. Herath, J. Ekanayake, E. Chinthaka, A. Ranabahu, D. Jayasinghe, S. Weerawarana, and G. Daniels, "Axis2, Middleware for Next Generation Web Services" IEEE International Conference on Web Services (ICWS'06), Chicago, Illinois, IEEE Computer Society, pp. 833-840, Sep 2006, http://doi.ieeecomputersociety.org/10.1109/ICWS.2006.36. Abstract

Fox, G. C., X. Qiu, S. Beason, J. Y. Choi, J. Ekanayake, T. Gunarathne, M. Rho, H. Tang, N. Devadasan, and G. Liu, "Biomedical Case Studies in Data Intensive Computing" The 1st International Conference on Cloud Computing (CloudCom 2009) , vol. 5931/2009, Beijing Jiaotong University, China, Springer Berlin / Heidelberg, pp. 2-18, Dec 1-4 2009, http://10.1007/978-3-642-10665-1_2, http://grids.ucs.indiana.edu/ptliupages/publications/FoxpaperOct10-09.pdf. Abstract

Chinthaka, E., J. Ekanayake, D. Leake, and B. Plale, "CBR Based Workflow Composition Assistant" Third International Workshop on Scientific Workflows (SWF 2009) , Los Angeles, IEEE Computer Society, pp. 352-355, Jul 2009, http://doi.ieeecomputersociety.org/10.1109/SERVICES-I.2009.51. Abstract

Ekanayake, J., S. Pallickara, and G. C. Fox, "Collaborative Framework for Scientific Data Analysis and Visualization" International Symposium on Collaborative Technologies and Systems (CTS 2008) , Irvine, CA, IEEE Computer Society, pp. 339-346, May 2008, http://10.1109/CTS.2008.4543948, http://grids.ucs.indiana.edu/ptliupages/publications/cts08-submission-final.pdf. Abstract

Kurze, T., L. Wang, G. von Laszewski, J. Tao, M. Kunze, F. Wang, D. Kramer, W. Karl, and J. Ekanayake, "Cyberaide Virtual Applicance: On-demand Deploying Middleware for Cyberinfrastructure" First International Conference on Cloud Computing (CLOUDCOMP 2009), Munich, Germany, Oct 19-21 2009, http://cyberaide.googlecode.com/svn/trunk/papers/09-tobias-cloudcomp/paper.pdf. Abstract

Fox, G. C., J. Qiu, S. Beason, J. Ekanayake, T. Gunarathne, J. Y. Choi, Y. Ruan, S. - H. Bae, and H. Li, "Data Intensive Biomedical Computing Systems" Indiana State IT Meeting, University Place Conference Center, Indianapolis, IN, Indiana University, Oct 1 2009, http://grids.ucs.indiana.edu/ptliupages/presentations/DataIntensiveBiomedicalComputingSystem_StateIT09_Poster2.pptx.

Ekanayake, J., T. Gunarathne, A. S. Balkir, G. C. Fox, C. Poulain, N. Araujo, and R. Barga, "DryadLINQ for Scientific Analyses" 5th IEEE International Conference on e-Science, Oxford UK, Dec 9-11 2009, http://grids.ucs.indiana.edu/ptliupages/publications/eScience09-camera-ready-submission.pdf. Abstract

Ekanayake, J., and G. C. Fox, "High Performance Parallel Computing with Clouds and Cloud Technologies" First International Conference on Cloud Computing (CLOUDCOMP 2009), Munich, Oct 19-21 2009, http://grids.ucs.indiana.edu/ptliupages/publications/cloudcomp_camera_ready.pdf. Abstract

Qiu, J., T. Gunarathne, J. Ekanayake, J. Y. Choi, S. - H. Bae, H. Li, B. Zhang, Y. Ryan, S. Ekanayake, T. - L. Wu, et al., "Hybrid Cloud and Cluster Computing Paradigms for Life Science Applications" the 11th Annual Bioinformatics Open Source Conference , Boston, MA, Jul 2010, http://www.open-bio.org/w/images/9/9f/40_BOSC2010.pdf.

Ekanayake, J., S. Pallickara, and G. C. Fox, "Map-Reduce for Data Intensive Scientific Analyses ." IEEE Fourth International Conference on eScience, 2008., Indianapolis, Indiana, IEEE Computer Society, pp. 277-284, Dec 2008, http://10.1109/eScience.2008.59, http://grids.ucs.indiana.edu/ptliupages/publications/ekanayake-MapReduce.pdf. Abstract

Pallickara, S., J. Ekanayake, and G. C. Fox, "An Overview of the Granules Runtime for Cloud Computing" IEEE Fourth International Conference on eScience, 2008, Indianapolis, Indiana, IEEE Computer Society, pp. 412-413, Dec 2008, http://10.1109/eScience.2008.101, http://grids.ucs.indiana.edu/ptliupages/publications/GranulesOverview-eScience2008.pdf.

Fox, G. C., S. - H. Bae, J. Ekanayake, X. Qiu, and H. Yuan, "Parallel Data Mining from Multicore to Cloudy Grids" International Advanced Research Workshop on High Performance Computing and Grids (HPC2008), Cetraro, Italy, Jul 03 2008, http://grids.ucs.indiana.edu/ptliupages/publications/CetraroWriteupJan09_v12.pdf. Abstract

Qiu, X., G. C. Fox, S. - H. Bae, J. Y. Choi, J. Ekanayake, and Y. Ruan, "SALSA Project for Data Intensive Scientific Analyses (2)" 2008 Fourth IEEE International Conference on eScience, Indianapolis, IN, Indiana University, Dec 2008, http://grids.ucs.indiana.edu/ptliupages/presentations/eScience08-poster2.jpg.

Pallickara, S., J. Ekanayake, and G. C. Fox, "A Scalable Approach for the Secure and Authorized Tracking of the Availability of Entities in Distributed Systems" The 21st IEEE International Parallel & Distributed Processing Symposium (IPDPS 2007), Long Beach, CA, IEEE Computer Society, pp. 103, Mar 2007, http://doi.ieeecomputersociety.org/10.1109/IPDPS.2007.370293, http://grids.ucs.indiana.edu/ptliupages/publications/NB-TrackingService.pdf. Abstract

Barga, R., C. Poulain, N. Araujo, T. Chou, E. Viegas, G. C. Fox, J. Ekanayake, M. Balazinska, and Y. C. Kwon, "Tools and Services for Data Intensive Research-1" Microsoft TechFest'09, Seattle, WA, Feb 24-25 2009, http://grids.ucs.indiana.edu/ptliupages/presentations/dryad-overview.pdf.

Barga, R., C. Poulain, N. Araujo, T. Chou, E. Viegas, G. C. Fox, J. Ekanayake, M. Balazinska, and Y. C. Kwon, "Tools and Services for Data Intensive Research-2" Microsoft TechFest'09, Seattle, WA, Feb 24-25 2009, http://grids.ucs.indiana.edu/ptliupages/presentations/dryad-composableapp.pdf.

Ekanayake, J., H. Li, B. Zhang, T. Gunarathne, S. - H. Bae, J. Qiu, and G. C. Fox, "Twister: A Runtime for Iterative MapReduce" The ACM International Symposium on High Performance Distributed Computing (HPDC), Chicago, Jun 2010, http://grids.ucs.indiana.edu/ptliupages/publications/twister__hpdc_mapreduce.pdf. Abstract

Journal Article

Ekanayake, J., T. Gunarathne, and J. Qiu, "Cloud Technologies for Bioinformatics Applications" IEEE Transactions on Parallel and Distributed Systems, vol. PP, no. PP, pp. 1-1, Oct 2010, 10.1109/TPDS.2010.178 , http://grids.ucs.indiana.edu/ptliupages/publications/TPDS_final_submission.pdf. Abstract