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brokers discovery
Pallickara, S., H. Gadgil, and G. C. Fox, "On the Discovery of Brokers in Distributed Messaging Infrastructures" 2005 IEEE International Conference on Cluster Computing , Burlington, MA , IEEE Computer Society, pp. 1-10, Sep 2005, http://doi.ieeecomputersociety.org/10.1109/CLUSTR.2005.347076, http://grids.ucs.indiana.edu/ptliupages/publications/NB-BrokerDiscovery.pdf. Abstract
Brokered Network
Kapadia, A., S. A. Myers, X. F. Wang, and G. C. Fox, "Toward Securing Sensor Clouds" IEEE International Symposium on Collaborative Technologies and Systems (CTS 2011), Philadelphia, PA, IEEE Computer Society, May 2011, http://grids.ucs.indiana.edu/ptliupages/publications/CTS2011-2.pdf. Abstract
Kapadia, A., S. A. Myers, X. F. Wang, and G. C. Fox, "Secure Cloud Computing with Brokered Trusted Sensor Networks" The 2010 International Symposium on Collaborative Technologies and Systems (CTS 2010) , Chicago, IL USA, IEEE, pp. 581-592, May 2010, 10.1109/CTS.2010.5478459 , http://grids.ucs.indiana.edu/ptliupages/publications/paper3.pdf. Abstract
Block Storage System
Gao, X., M. Lowe, and M. Pierce, "Virtual Block Store System"TeraGrid 09 meeting , Arlington, VA, Jun 22-25 2009, http://grids.ucs.indiana.edu/ptliupages/publications/VBS_abstract.pdf.
BLAST
Fox, G. C., "Algorithms and Application for Grids and Clouds"The 22nd ACM Symposium on Parallelism in Algorithms and Architectures, Santorini, Greece, ACM, Jun 2010, http://grids.ucs.indiana.edu/ptliupages/publications/spaa17vt-fox.pdf. Abstract
blade cluster
Stewart, C. A., M. Link, D. S. McCaulay, G. Rodgers, G. Turner, D. Hancock, P. Wang, F. Saied, M. Pierce, R. Aiken, et al., "Implementation, performance, and science results from a 30.7 TFLOPS IBM BladeCenter cluster" Concurrencey and Computation: Practice and Experience, vol. 22, no. 2, pp. 157 - 174, Oct 2009, http://10.1002/cpe.1539, http://pti.iu.edu/sites/default/files/Stewart_BigRed_CCPE.pdf. Abstract  Download: 
Bittorrent
Kaplan, A., G. C. Fox, and G. von Laszewski, "GridTorrent Framework: A High-performance Data Transfer and Data Sharing Framework for Scientific Computing" Grid Computing Environments (GCE) workshop at Supercomputing'07 , Reno, NV, Nov 2007, http://grids.ucs.indiana.edu/ptliupages/publications/Oct.1.2007.GCE07.paper.akaplan.final.pdf. Abstract
Biometrics
Du, Y., C. Belcher, Z. Zhou, and R. Ives, "Feature Correlation Evaluation Approach for Iris Image Quality Measure" Signal Processing, vol. 90, no. 4, pp. 1176-1187, Apr 2010, http://10.1016/j.sigpro.2009.10.001. Abstract
Biomedical document retrieval
Lourenço, A., R. C. Carreira, D. Glez-Peña, J. R. Méndez, S. A. Carneiro, L. M. Rocha, F. Díaz, E. C. Ferreira, I. P. Rocha, F. Fdez-Riverola, et al., "BioDR: Semantic indexing networks for biomedical document retrieval" Expert Systems with Applications, vol. 37, no. 4, pp. 3444-3453, Apr 2010, 10.1016/j.eswa.2009.10.044. Abstract
Biology and genetics
Kolchinsky, A., A. Abi-Haidar, J. Kaur, A. A. Hamed, and L. M. Rocha, "Classification of Protein-protein Interaction Full-text Documents Using Text and Citation Network Features" IEEE/ACM Transactions On Computational Biology And Bioinformatics , vol. PP, no. 99, pp. 1-1, May 2010, http://doi.ieeecomputersociety.org/10.1109/TCBB.2010.55. Abstract
bioinformatics
Stewart, C. A., D. Hart, R. Repasky, M. Papakhian, A. Shankar, E. A. Wernert, A. D. Arenson, and G. Bernbom, "Advanced information technology support for life sciences research" Association for Computing Machinery. Special Interest Group on University and College Computing Services (SIGUCCS’03), San Antonio, Texas, ACM, Sep 2003, http://delivery.acm.org/10.1145/950000/947472/p7-stewart.pdf?key1=947472&key2=7858166621&coll=GUIDE&dl=GUIDE&CFID=76893714&CFTOKEN=63867740. Abstract
Pallickara, S. L., M. Pierce, Q. Dong, and C. H. Kong, "Enabling Large Scale Scientific Computations for Expressed Sequence Tag Sequencing over Grid and Cloud Computing Clusters" Eighth International Conference on Parallel Processing and Applied Mathemathics (PPAM 2009), Workshop on Parallel Computational Biology, Wroclaw, Poland, Springer-Verlag, Sep 2009, http://grids.ucs.indiana.edu/ptliupages/publications/pbc-swarm09submit.pdf. Abstract
Qiu, X., J. Ekanayake, S. Beason, T. Gunarathne, G. C. Fox, R. Barga, and D. Gannon, "Cloud Technologies for Bioinformatics Applications" 2nd ACM Workshop on Many-Task Computing on Grids and Supercomputers (Supercomputing'09), Portland, OR, Nov 09, 2009, http://grids.ucs.indiana.edu/ptliupages/publications/MTAGS09-23.pdf. Abstract
Binary Representation
Oh, S., and G. C. Fox, HHFR: A New Architecture for Mobile Web Services: Principles and Implementations , Bloomington, IN, Indiana University Community Grids Laboratory, Sep 2005, http://grids.ucs.indiana.edu/ptliupages/publications/HHFR_ohsangy.pdf. Abstract
binary encoding
Oh, S., H. Bulut, A. Uyar, W. Wu, and G. C. Fox, "Optimized Communication Using the SOAP Infoset for Mobile Multimedia Collaboration Applications" IEEE International Symposium on Collaborative Technologies and Systems, no. DOI, St. Louis, MO, IEEE Computer Society, pp. 32-39, May 2005, http://doi.ieeecomputersociety.org/10.1109/ISCST.2005.1553291, http://grids.ucs.indiana.edu/ptliupages/publications/OptSOAP_CTS05.pdf. Abstract
bibliographic systems
Radicchi, F., S. Fortunato, B. Markines, and A. Vespignani, "Diffusion of scientific credits and the ranking of scientists" Phys. Rev. E, vol. 80, no. 5, pp. 056103-1 - 056103-10, 2009, 10.1103/PhysRevE.80.056103, http://link.aps.org/doi/10.1103/PhysRevE.80.056103. Abstract
Berkeley DB XML
Xiang, X., and B. Plale, Performance Evaluation of MySQL 5.0 and Berkeley DB XML as a Grid Resource Information Manager (GRIM) with a Benchmark/Workload , no. TR-645, Bloomington, IN, Indiana University, pp. 19, Feb 2007. Abstract  Download: TR645.pdf (161.45 KB)
Benchmarking
Hoefler, T., T. Schneider, and A. Lumsdaine, "Accurately Measuring Collective Operations at Massive Scale" Proceedings of the 22nd IEEE International Parallel & Distributed Processing Symposium (IPDPS), Miami, FL, Apr 2008, 10.1109/IPDPS.2008.4536494 , ./img/hoefler-pmeo08.pdf. Abstract
Venkatraman, A., V. Pandey, B. Plale, and S. - S. Shei, Benchmarking Effort of Virtual Machines on Multicore Machines , no. TR-654, Bloomington, IN, Indiana University, pp. 19, Dec 2007. Abstract  Download: TR654.pdf (1.01 MB)
Hoefler, T., T. Schneider, and A. Lumsdaine, "LogGP in Theory and Practice - An In-depth Analysis of Modern Interconnection Networks and Benchmarking Methods for Collective Operations" Elsevier Journal of Simulation Modelling Practice and Theory, vol. 17, no. 9, pp. 1511-1521, Oct 2009, http://10.1016/j.simpat.2009.06.007 . Abstract
batch scheduling
Barrett, B., J. Squyres, and A. Lumsdaine, "Integration of the LAM/MPI environment and the PBS scheduling system" Proceedings, 17th Annual International Symposium on High Performance Computing Systems and Applications, Quebec, Canada, May 2003, http://www.lam-mpi.org/papers/hpcs2003/tm-implementation.pdf.